Table of primers used to amplify and sequence the nuclear encoded COX loci

Subunit	Drosophila Gene	FlyBase ID	Chromosome Arm	Map Position	Primer Name	Primer Sequence
COX4	CG106644	FBgn0032833	2L	38A3	COX4F COX4R COX4-INT-F COX4-INT-R2	CTACCTTGCAGACTCTGTGAG CTTAATCACACACAATCGCGG AGCTTCTGCCAGACTATCG GCTCATCGTACACTGAAAGG
COX4-2	CG10396	FBgn0033020	2R	41E5	COX4-2-EXT-F COX4-2-EXT-R COX4-2-INT-F COX4-2-INT-R	AACACAACTGTCGAATTTCC GATTCAGCACGTAACGATCA GGTTAGCCCAGAGTTGTGT CTTTTCATCCAGCGACAG
COX5A	CG14724	FBgn0019624	3R	86F9	COX5A-EXT-F COX5A-EXT-R COX5A-INT-F COX5A-INT-R	GCAGTAGCCAGCATCAAT GTTCATCCGCACCATACA CAGCATGTTGAGCATCAC AGATCGTTCATGCCCTTG
COX5B	CG11015	FBgn0031830	2L	26E3	COX5B-1A-EXT-F COX5B-1A-EXT-R COX5B-1A-INT-F COX5B-1A-INT-R COX5B-1B-EXT-R COX5B-1B-INT-F COX5B-1B-INT-R	TGATCCATAGCTGTGTGAAA AATCTCTGCCATTATCCTGA TCTATTGAAAGTGCGAGGTT CCGTCACAAGTACAGCTCTT GACAGCTAAGTGGGTTGACT TGGGCTGCATCTGTAAGT AATCTCTGCCATTATCCTGA
COX5B-2	CG11043	FBgn0031831	2L	26E3	COX5B-2-EXT-F COX5B-2-EXT-R COX5B-2-INT-F COX5B-2-INT-R	AACTCACTCAAAGTGGGAAA AGATAGTTGTTGTGCGTCTAAC GATCTCCAGTTCAGGTCTCA CTGATCACCTTGCTGAAAC
COX6A	CG17280	FBgn0034877	2R	59E3	COX6A-1-EXT-F COX6A-1-EXT-R COX6A-1-INT-F COX6A-1-INT-R COX6A-1-INT-R2	TTTAGAAATCACGGCCAACC CTCCTCACCAGAATTCCGCTG GATTGGTGGAGAAGGATTC CCTGAAGGATGAGAGATGAG ATTTCCGCGTAAAGTTCAG
COX6A-2	CG14077	FBgn0036830	3L	75E5	COX6A-2-EXT-F COX6A-2-EXT-R COX6A-2-INT-F COX6A-2-INT-F2 COX6A-2-INT-R	GGCATGTTGGGGAAATTGTA TACGACCTGTTGCCCTTGAT CTAAAGTTACGCCGCCAAAG AGAGGAGCGTCTTGAGTTTA TGGATCGCTGTTAGAGGTTTC
COX6A-3	CG3093	FBgn0000482	X	2B5	COX6A-3-EXT-F COX6A-3-EXT-R COX6A-3-INT-F COX6A-3-INT-R	AATAGAAGTAGCCGCTTGG CCTTTGTTTGGTTCTGGAC GAGAGTTCCTAATTGCGACA ATCGCAGTTGGTCATCATA
COX6B	CG14235	FBgn0031066	X	18E5	COX6B-1-EXT-F COX6B-1-EXT-R COX6B-1-INT-F COX6B-1-INT-R	CAAACGCAAACTGAAGAAC CAGGACCAAGAATCAAGGAT TCATTTGGACAACGATCC TTACCACGCTCCTCTACCT
COX6C	cyclope	FBgn0015031	2L	25D6	COX6C-INT-F COX6C-INT-R COX6C-EXT-F COX6C-EXT-R	TCTGGGGAGAATTCATTAG TCAATACAGAAGCGCAACTC GTCAAATTGTCTAGGAGTGCT CTGGACTACAAGGACTTTGC
COX7A	CG18193	FBgn0037579	3R	84F13	COX7A-EXT-F COX7A-EXT-R COX7A-INT-F COX7A-INT-R	AGAGAGCGAATAGTGTGACC CAAGTTGTTCAAGCAGTGTG TGAAACCCTTCCAGAAATC ATATAGCCAAGCCACAACC
COX7C	CG2249	FBgn0040773	2R	46D8--9	COX7C-1-EXT-F COX7C-1-EXT-R COX7C-1-INT-F COX7C-1-INT-R	GCAATGAAGGAATGACTACG CGAGCACAGTTTCCATAGTT TCGACCATTTGTCATCTCT CAGCAGATAACGCTACATC
COC8	CG7181	FBgn0037097	3L	78D5	COX8-F COX8-R	TTTACGCCAGCGTATTTTGC CTCTCTACTTTACAAGCGTA